DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
- kmer
- dnabert-model
- kmer-format
- gpu
Repository Index
73,862 visible repositories in the index
193–216 of 466 · Most stars
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
A Go package for engineering organisms.
- synthetic-biology
- synbio
- genetic-engineering
- molecular-biology
A C implementation for creating 2D Voronoi/Delauney diagrams
VexCL is a C++ vector expression template library for OpenCL/CUDA/OpenMP
- opencl
- cuda
- c-plus-plus
- gpgpu
Clinical Histopathology Imaging Evaluation Foundation Model
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
A flexible framework for solving PDEs with modern spectral methods.
- spectral-methods
- fluid-dynamics
- pde-solver
:1234: Bits, bytes and general-purpose calculator
- storage
- storage-unit-converter
- command-line
- standalone
Official release of the ProGen models
- language-model
- protein
- generative-model
A Compositional Numeric Library for C++
- cmake
- cpp
- fixed-point
- safe
Generation of protein sequences and evolutionary alignments via discrete diffusion models
- discrete-diffusion
- generative-model
- multiple-sequence-alignment
- protein-sequences
A Python package to visualise neuroanatomical data in atlas space
- neuroscience
- python
- anatomy
- visualization
Modern C++ quantum computing library
- quantum-computing
- c-plus-plus
- cpp
- cpp11
Simple finite element assemblers
- fem
- python
- pde
⚗ A package useful for chemistry written in Python
- chemistry
- physical-chemistry
- chemical-kinetics
- chemical-formulas
Nonconvex embedded optimization: code generation for fast real-time optimization + ROS support
- embedded-optimization
- nonconvex
- model-predictive-control
- rust-library
FiPy is a Finite Volume PDE solver written in Python
- scientific-computing
- scientific-computing-with-python
- phase-field
- materials-science
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
:spider_web: Mesh optimization, mesh smoothing.
- python
- pypi
- mathematics
- physics
OmegaFold Release Code
Module for statistical learning, with a particular emphasis on time-dependent modelling
- machine-learning
- python
- point-process
- optimization
DiffSharp: Differentiable Functional Programming
- machine-learning
- tensor
- dotnet
- autodiff