Repository Index

Cumo (pronounced like "koomo") is CUDA aware numerical library whose interface is highly compatible with Ruby Numo

• ruby
• cuda
• numo
• scicentific-computing

PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.

🔟 Implementation of rational number arithmetic for .NET with arbitrary precision.

• arbitrary-precision
• biginteger
• bigrational
• c-sharp

A GDScript port of Delaunator: A fast library for Delaunay triangulation of 2D points.

• computational-geometry
• algorithm
• gdscript
• delaunay

The Mines Java Toolkit

• geophysics
• scientific-computing
• visualization
• mines-java-toolkit

python functions for simulating optical transfer functions

• microscopy
• numpy

The Configurable Math Library

• vector-math
• expression-template
• cplusplus-11
• graphics

slick is a simple to use polygon collision library inspired by bump.lua

The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation.

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

• computational-biology
• bioinformatics
• graph-convolution
• deep-learning

A simple, lightweight spatial hash for Lua

Fast detection of repackaged Android applications based on the comparison of resource files included into the package.

• android
• android-security
• repackaging-detection
• java

PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).

• deep-generative-model
• deep-learning
• single-cell-data-integration
• single-cell-multiomics

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

• cell-annotation
• multiplexed-imaging
• mpif

A simple ffi-accelerated vector library for everyone

a simple vector library for Lua based on the PVector class from processing

• lua
• love2d
• vectors
• game-development

Classification and Gradient-based Localization of Chest Radiographs using PyTorch.

• fine-tuning
• vgg16
• resnet18
• densenet121

C# math expression library with symbolic computation support

• csharp
• dotnet
• expression-parser
• math

An Erlang implementation of the R*-tree spacial data structure

Elixir library implementing a parallel matrix multiplication algorithm and other utilities for working with matrices. Used for benchmarking computationally intensive concurrent code.

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

• minerva
• microscopy
• ome
• immunofluorescence

An Elixir implementation of the CONREC algorithm for topographic or isochrone maps.

• gis
• conrec
• map
• elixir

SIMD powered simple-math numerical operations on arrays for Common Lisp through CFFI [still experimental]

• lisp
• common-lisp
• scientific-computing
• simd

Tool for precise, interactive, fast and scalable FISH spot detection