Segment Anything in Medical Images
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Unsupervised Learning for Image Registration
- image-registration
- image-alignment
- machine-learning
- deep-learning
Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.
- semi-supervised-learning
Large Language-and-Vision Assistant for Biomedicine, built towards multimodal GPT-4 level capabilities.
Open source tools for computational pathology - Nature BME
- histopathology
- pathology
- weakly-supervised-learning
- whole-slide-imaging
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
- hubmap
- imaging
- openmicroscopy
- ome-tiff
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
The repository host gives no description.
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
AI-based pathology predicts origins for cancers of unknown primary - Nature
- histology
- pathology
- wsi-images
- histopathology
Interoperable web-based DICOM slide microscopy viewer and annotation tool
Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
- minerva
- microscopy
- ome
- immunofluorescence
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
- qa
- mri
- neuroimaging
- niqc
Histology Topography Cytometry Analysis Toolbox
legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm
- fmri-preprocessing
- fmri