Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Repository Index
47,133 repositories indexed
1–10 of 10 · Most stars
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Foundation Models for Genomics & Transcriptomics
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
- foundation-models
- genomics
- language-models
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
Interpretable bilinear attention network with domain adaptation improves drug-target prediction.
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
Predicting Cell Health with Morphological Profiles
- carpenter-lab
- morphological-profiling
- crispr
- cell-painting