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Genetic Algorithm, Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization Algorithm,Immune Algorithm, Artificial Fish Swarm Algorithm, Differential Evolution and TSP(Traveling salesman)
Apache KIE (Knowledge Is Everything) is the home of Drools, OptaPlanner, jBPM, and Kogito.
A fast and flexible implementation of Rigid Body Dynamics algorithms and their analytical derivatives
:christmas_tree:Visualization and annotation of phylogenetic trees
🎯 A comprehensive gradient-free optimization framework written in Python
One open-source modeler for structures, heat and fluids, built from scratch in pure Rust: parametric part in, verified results out. Automatic all-hex and tet meshing, our own nonlinear implicit and explicit FEA, heat transfer and lattice Boltzmann CFD — every result checked against theory. For engineers and AI agents alike. Free, forever.
ChemML is a machine learning and informatics program suite for the chemical and materials sciences.
Interoperable web-based DICOM slide microscopy viewer and annotation tool
🏃 The go-to single-cell Foundation Model
OFF, Open source Finite volume Fluid dynamics code
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.
A metaheuristic optimization framework
UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.
Generative models for transcriptomic-driven or protein-driven molecular design (PaccMann^RL).
This is a debugger for use with cannon-es and BabylonJS