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Suite of tools for deploying and training deep learning models using the JVM. Highlights include model import for keras, tensorflow, and onnx/pytorch, a modular and tiny c++ library for running math code and a java based math library on top of the core c++ library. Also includes samediff: a pytorch/tensorflow like library for running deep learn...
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
Mesa is an open-source Python library for agent-based modeling, ideal for simulating complex systems and exploring emergent behaviors.
A python module for scientific analysis of 3D data based on VTK and Numpy
USD BRep is a standalone C++ and Python library for NURBS-based boundary representation (BRep) solid modeling
A collection of GICP-based fast point cloud registration algorithms
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
Spearmint Bayesian optimization codebase
Gazebo database of SDF models. This is a predecessor to https://app.gazebosim.org
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
Cosette is an automated SQL solver.
A Euclidean diffusion model for structure-based drug design.
Sequential regulatory activity predictions with deep convolutional neural networks.
Universal cheminformatics toolkit, utilities and database search tools
Ark -- Archetype-based Entity Component System (ECS) for Go.
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
ChEMBL database structure pipelines
Graph-based molecule modeling toolkit for cheminformatics
D3 plugin which computes a treemap based on a Voronoi tesselation
A formalization of geometry in Coq based on Tarski's axiom system
Genomic sequence storage, indexing and alignment inside PostgreSQL: https://bioseqdb.com/
scPerturb: A resource and a python/R tool for single-cell perturbation data
AI-based pathology predicts origins for cancers of unknown primary - Nature
An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC