Repository Index

Media Gallery app for Android made with Jetpack Compose

• android
• android-gallery
• gallery
• jetpack-compose

An open-source application for biological image analysis

WebGL accelerated JavaScript molecular graphics library

• molecular-graphics
• molecular-modeling
• computational-biology
• computational-chemistry

ImageWorkshop is a PHP5.3+ library that helps you to manage images based on GD library

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

• omero
• java
• python
• server

Read and write Neuroglancer datasets programmatically.

• neuroglancer
• volumetric-data
• python
• cloud

:art: Image processing toolbox for R

• r
• bioinformatics
• image-processing
• image-analysis

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

• stitching
• microscopy
• microscopy-images
• fluorescence-microscopy-imaging

Plugins for bone image analysis

• fiji-plugin
• image-analysis
• image-processing
• imagej-plugins

An interactive image processing program for biologists written in Python.

• biologists
• python
• imagej
• calcium

Z-stack Depth Colorcode ImageJ FIJI plugin

• imagej-plugin
• colorcode
• fiji
• imagej

A Python package to analyze matrix fiber orientation and intensity around cells as a proxy for cellular forces. Also measures alignment relative to X/Y axes, points and lines, with optional masks, a Python API and browser tools for analysis and group comparisons.

• contractility
• orientation
• fibrosis
• mechanobiology