Aim 💫 — An easy-to-use & supercharged open-source experiment tracker.
- python
- ai
- data-science
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Repository Index
69,734 visible repositories in the index
1–24 of 39 · Most stars
🍊 :bar_chart: :bulb: Orange: Interactive data analysis
- data-mining
- data-science
- machine-learning
- data-visualization
Open Source Biometrics, Face Recognition
[IEEE TMI Best Paper Award] Official Implementation for UNet++
- medical-imaging
- segmentation
- unet
- biomedical-imaging
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
- segmentation
- cell-segmentation
- cell-biology
Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
A full spaCy pipeline and models for scientific/biomedical documents.
- scientific-documents
- spacy
- custom-pipes
- nlp
BirdNET analyzer for scientific audio data processing.
- bioacoustics
- birds
- birdsong
- acoustic-monitoring
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
- diffusion-models
- docking
- binding
- computational-biology
Biological foundation modeling from molecular to genome scale
StarDist - Object Detection with Star-convex Shapes
- bioimage-analysis
- cell-segmentation
- nuclei-segmentation
- object-detection
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
Plant phenotyping with image analysis
- science
- bioinformatics
- image-analysis
- plant-phenotyping
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
Segment Anything for Microscopy
- microscopy-images
- segment-anything
- segmentation
- cell-segmentation
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
Official repository for the ProteinGym benchmarks
- benchmark
- computational-biology
- protein
- protein-design
Deep Learning Library for Single Cell Analysis
- deep-learning
- tensorflow
- instance-segmentation
- cell-biology
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
- tensorflow
- python3
- keras
- resnet-101
PyTorch Connectomics: segmentation toolbox for EM connectomics
- computer-vision
- neuroscience
- connectomics
- pytorch
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.