a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
- segmentation
- cell-segmentation
- cell-biology
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Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
- diffusion-models
- docking
- binding
- computational-biology
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
Official repository for the ProteinGym benchmarks
- benchmark
- computational-biology
- protein
- protein-design
Deep Learning Library for Single Cell Analysis
- deep-learning
- tensorflow
- instance-segmentation
- cell-biology
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
- tensorflow
- python3
- keras
- resnet-101
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
- biology
- fluorescence
- image-analysis
- image-processing
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
- computational-biology
- bioinformatics
- graph-convolution
- deep-learning
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
- microscopy
- image-processing
- segmentation
- biology
scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection