Repository Index

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

• medical-imaging
• medical-ai
• deep-learning
• machine-learning

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

• histopathology-images
• microscopy
• sliding-windows
• medical-image-analysis

A tool for semi-automatic cell type classification

• python
• single-cell
• machine-learning
• scrna-seq

Ruby/Numo::NArray - New NArray class library

• numo
• narray
• ruby
• ruby-numo

MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.

A library of abstract interfaces for mathematical structures in Coq [maintainer=@spitters,@Lysxia]

• coq-library
• typeclasses
• mathematics
• coq

code to run sei and obtain sei and sequence class predictions

Toolbox for the analysis of smFISH images.

• pattern-classification
• rna-localization
• segmentation
• smfish

a simple vector library for Lua based on the PVector class from processing

• lua
• love2d
• vectors
• game-development

Classification and Gradient-based Localization of Chest Radiographs using PyTorch.

• fine-tuning
• vgg16
• resnet18
• densenet121

A library of Actionscript 3 classes for 3D Mathematics.

A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources

• bioimage-analysis
• cell-classification
• computer-vision
• digital-pathology

DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.

This is a class module in beta state to implement computations with large integers and reals/rationals numbers, while proposing representation of numerical values as scientific notation, allowing to obtain several cohorts for the same number (a lot of fun!).

• arithmetic
• biginteger
• biginteger-library
• fractional