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CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python, Matlab/Octave, Julia or Javascript

Lightweight, general, scalable C++ library for finite element methods

Linear algebra, eigenvalues, FFT, Bessel, elliptic, orthogonal polys, geometry, NURBS, numerical quadrature, 3D transfinite interpolation, random numbers, Mersenne twister, probability distributions, optimisation, differential equations.

Qhull development for www.qhull.org -- Qhull 2020.2 (8.1-alpha1) at https://github.com/qhull/qhull/wiki

A Go package for engineering organisms.

  • synthetic-biology
  • synbio
  • genetic-engineering
  • molecular-biology

Vision-Language Pathology Foundation Model - Nature Medicine

  • bioimage-analysis
  • bioimage-informatics
  • conch
  • foundation-model

Python-centric Cookiecutter for Molecular Computational Chemistry Packages

  • cookiecutter
  • python-packages
  • molecular-sciences
  • conda-environment

Exascale multiphase flow solver — 2025 Gordon Bell Prize Finalist | 200T grid points on 43K+ GPUs

  • gpu
  • exascale
  • cfd
  • fortran