Repository Index

Manage local photos on Android: gallery, geotag with photomap, privacy, tags, find, sort, view, copy, send, ... .

• android
• photos
• gallery
• photo-manager

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

• omero
• java
• python
• server

Read and write Neuroglancer datasets programmatically.

• neuroglancer
• volumetric-data
• python
• cloud

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

• python
• microscopy
• scripting
• automation

A collection of tools for painting super-resolution images

• microscopy
• super-resolution
• smlm
• dna-paint

Accurate and efficient spot detection for microscopy data

The python-microscopy environment - an open-source package for light microscopy

Gaussian processes and Bayesian optimization for images and hyperspectral data

• image-processing
• hyperspectral-images
• gaussian-processes
• bayesian-optimization

Pure Python library for reading NIS Elements ND2 images and metadata

• nd2
• pims
• nikon
• nis-elements

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

• stitching
• microscopy
• microscopy-images
• fluorescence-microscopy-imaging

Lattice light-sheet post-processing utility.

• microscopy
• light-sheet
• image-processing
• image-analysis

Noise Correction Algorithm for sCMOS cameras

• cmos
• imaging
• noise
• readout

An interactive image processing program for biologists written in Python.

• biologists
• python
• imagej
• calcium

Z-stack Depth Colorcode ImageJ FIJI plugin

• imagej-plugin
• colorcode
• fiji
• imagej

Imagej macro to calculate the MTF based on a knife edge measurement

• imagej-macro
• electron-microscopy
• image-analysis
• x-ray-imaging

A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).

• imaging
• microscopy
• contractility
• collagen

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

• segmentation
• image-processing
• zebrafish
• vasculature

Panoptic segmentation algorithms for 2D and 3D electron microscopy images

• deep-learning
• semantic-segmentation
• segmentation
• pytorch