Open source code for AlphaFold 2.
Repository Index
81,588 visible repositories in the index
1–24 of 130 · Most stars
AlphaFold 3 inference pipeline.
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
- drug-discovery
- quantum-chemistry
- deep-learning
- biology
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
Genome modeling and design across all domains of life
Official repository for the Boltz biomolecular interaction models
- binding-prediction
- drug-discovery
- protein-structure
Biomni: a general-purpose biomedical AI agent
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
- tensorflow
- deep-neural-network
- genomics
- science
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
- pytorch
- protein-structure
- alphafold2
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
- openworm
- elegans
- biology
- simulation
Making Protein folding accessible to all!
- bioinformatics
- multiple-sequence-alignment
- protein-structure
- structure-prediction
R toolkit for single cell genomics
- human-cell-atlas
- single-cell-rna-seq
- single-cell-genomics
- cran
Single-cell analysis in Python. Scales to >100M cells.
- machine-learning
- data-science
- visualize-data
- transcriptomics
Reverse engineering SARS-CoV-2
- covid-19
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
- fastq
- qc
- preprocessing
- filtering
NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing
- python
- ecg
- eda
- emg
A versatile pairwise aligner for genomic and spliced nucleotide sequences
- bioinformatics
- sequence-alignment
- spliced-alignment
- genomics
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
MMseqs2: ultra fast and sensitive search and clustering suite
- bioinformatics
- sequence-clustering
- profile-search
- sequence-search
Toward High-Accuracy Open-Source Biomolecular Structure Prediction.
- ai4science
- research
Official code repository for GATK versions 4 and up
Tools (written in C using htslib) for manipulating next-generation sequencing data
Data intensive science for everyone.
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.