Repository Index

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• segmentation

Segment Anything in Medical Images

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

• nci-itcr
• nci-qin
• quantitative-imaging
• imaging-informatics

This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Unsupervised Learning for Image Registration

• image-registration
• image-alignment
• machine-learning
• deep-learning

Multi-platform, free open source software for visualization and image computing.

• medical-imaging
• vtk
• itk
• python

Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.

• semi-supervised-learning

[IEEE TMI Best Paper Award] Official Implementation for UNet++

• medical-imaging
• segmentation
• unet
• biomedical-imaging

Medical imaging processing for AI applications.

• pytorch
• medical-image-computing
• deep-learning
• data-augmentation

Many studies have shown that the performance on deep learning is significantly affected by volume of training data. The MedicalNet project provides a series of 3D-ResNet pre-trained models and relative code.

Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation

• convolutional-neural-networks
• attention-model
• image-classification
• image-segmentation

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

• segmentation
• deep-learning
• pytorch
• medical-imaging

Train AI models efficiently on medical images using any framework

• pytorch
• deep-learning
• keras
• neuroimaging

DICOM Web Viewer: open source zero footprint medical image library.

• dicom
• medical-imaging
• zero-footprint
• viewer

Open source tools for computational pathology - Nature BME

• histopathology
• pathology
• weakly-supervised-learning
• whole-slide-imaging

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

• itk
• insight-toolkit
• image-analysis
• medical-imaging

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

• medical-imaging
• medical-ai
• deep-learning
• machine-learning

3D medical imaging reconstruction software

• dicom
• dicom-viewer
• magnetic-resonance-imaging
• medical-image-processing

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

Dicoogle - Open Source PACS

• dicoogle
• dicom
• pacs
• medical-imaging

U-Net Brain Tumor Segmentation

• tensorflow
• tensorlayer
• unet
• medical-imaging

C library for reading virtual slide images

• pathology
• whole-slide-imaging
• c