Repository Index

Burn is a next generation tensor library and Deep Learning Framework that doesn't compromise on flexibility, efficiency and portability.

• autodiff
• deep-learning
• machine-learning
• rust

Bayesian optimization in PyTorch

Adaptive Experimentation Platform

Vulkan/CUDA/HIP/OpenCL/Level Zero/Metal Fast Fourier Transform library

• vulkan
• fft
• convolution
• r2c

A research toolkit for particle swarm optimization in Python

• particle-swarm-optimization
• optimization-tools
• pso
• global-optimization

Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.

:four_leaf_clover: Evolutionary optimization library for Go (genetic algorithm, partical swarm optimization, differential evolution)

• go
• optimization
• parallel
• machine-learning

🎯 A comprehensive gradient-free optimization framework written in Python

• metaheuristics
• optimization
• optimization-algorithms
• python

A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.

• optimization
• optimization-algorithms
• optimization-methods
• optimization-problem

Dicoogle - Open Source PACS

• dicoogle
• dicom
• pacs
• medical-imaging

PyKEP is a scientific library providing basic tools for research in interplanetary trajectory design.

• interplanetary
• mission-analysis
• astrodynamics
• aerospace

Produce a sharp image of a planetary system object (moon, sun, planets) from many seeing-affected frames according to the "lucky imaging" technique.

Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk

• bioinformatics
• exact-optimization
• metabolomics
• paired-data

A command-line utility for quick math.

• math
• cli
• calculus
• algebra

Interpretable bilinear attention network with domain adaptation improves drug-target prediction.

ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

• neuroimaging
• reproducibility
• pipeline
• meta-analysis

A strongly-typed genetic programming framework for Python

• python
• ipynb
• genetic-programming
• framework

Graph data structures with multiple heterogeneous metadata for Graphs.jl.

• graph
• graphs
• metadata
• juliagraphs

An extensible .NET genetic algorithm library for optimization and artificial intelligence - Evolutionary computation and complex problem solving made simple

• artificial-intelligence
• csharp
• dotnet
• evolutionary-algorithm

A metaheuristic optimization framework

• optimization
• optimization-algorithms
• optimization-methods
• genetic-algorithm

Interpretable modeling of cellular responses to drug perturbations using cycle consistence learning

Vendor-agnostic, FHIR-Genomics-aligned API contract for cross-vendor NGS interpretation. JSON Schema + TypeScript + Python pydantic.

This is a class module in beta state to implement computations with large integers and reals/rationals numbers, while proposing representation of numerical values as scientific notation, allowing to obtain several cohorts for the same number (a lot of fun!).

• arithmetic
• biginteger
• biginteger-library
• fractional

Interpretable drug response prediction with graph neural networks over drugs, cell lines, and genes.