Repository Index

A "batteries-included" distribution of ImageJ :battery:

TrackMate is your buddy for your everyday tracking.

• image-analysis
• single-particle-tracking
• fiji-plugin

Collection of mathematical morphology methods and plugins for ImageJ

• image-processing
• image-analysis
• imagej
• fiji

Fiji library to perform image segmentation based on the Weka learning schemes

The framework for quantification of neuronal anatomy

• neuroscience
• neuroanatomy-toolbox
• imagej
• imagej2

ImageJ functions and macros for working with thermal image files

• heat-transfer
• temperature-reading
• thermal-imaging
• imagej-macro

Plugins for bone image analysis

• fiji-plugin
• image-analysis
• image-processing
• imagej-plugins

Z-stack Depth Colorcode ImageJ FIJI plugin

• imagej-plugin
• colorcode
• fiji
• imagej

Modular image and object analysis workflows for ImageJ/Fiji

• fiji-plugin
• modular
• imagej
• image-processing

Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.

• imagej
• fiji
• electron-microscopy
• scalebar

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

• segmentation
• image-processing
• zebrafish
• vasculature

XitoSBML - the spatial SBML plugin for ImageJ

• sbml
• systems-biology
• spatial-sbml-plugin
• imagej