Physics Informed Deep Learning: Data-driven Solutions and Discovery of Nonlinear Partial Differential Equations
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A library for scientific machine learning and physics-informed learning
- neural-network
- deep-learning
- scientific-machine-learning
- pinn
This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Foundation Models for Genomics & Transcriptomics
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
- kmer
- dnabert-model
- kmer-format
- gpu
The repository host gives no description.
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
Repository for Nicheformer: a foundation model for single-cell and spatial omics
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
BulkFormer: A large-scale foundation model for human bulk transcriptomes
Research experiments exploring uncommon quant techniques.
- analysis
- jupyter-notebook
- python
- quant
A Darksky.net (formerly forecast.io) weather API client for Elixir
- darksky
- forecast
- elixir
- weather
Simple webapp for generating small ligand conformers
- computational-biology
- computational-chemistry
- conformer-generation
- rdkit