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Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
Official git repository for Biopython (originally converted from CVS)
Deep probabilistic analysis of single-cell and spatial omics data
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
Cloud-native genomic dataframes and batch computing
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Foundation Models for Genomics & Transcriptomics
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Fast, sensitive and accurate integration of single-cell data with Harmony
Spatial Single Cell Analysis in Python
Reference mapping for single-cell genomics
Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star
Fusing Histology and Genomics via Deep Learning - IEEE TMI
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
Genomic sequence storage, indexing and alignment inside PostgreSQL: https://bioseqdb.com/
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
Autonomous multi-agent framework to optimize scientific software
MCP server for spatial transcriptomics analysis through natural language interfaces.
Multigrate: multiomic data integration for single-cell genomics
Vendor-agnostic, FHIR-Genomics-aligned API contract for cross-vendor NGS interpretation. JSON Schema + TypeScript + Python pydantic.