Repository Index

Multi-platform, free open source software for visualization and image computing.

• medical-imaging
• vtk
• itk
• python

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

• histopathology-images
• microscopy
• sliding-windows
• medical-image-analysis

A Python interface to access neuroanatomical atlases

• neuroscience
• python
• microscopy
• registration

Automated 3D brain registration with support for multiple species and atlases.

• registration
• atlases
• brain
• neuroscience