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• segmentation

Segment Anything in Medical Images

This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Multi-platform, free open source software for visualization and image computing.

• medical-imaging
• vtk
• itk
• python

Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.

• semi-supervised-learning

[IEEE TMI Best Paper Award] Official Implementation for UNet++

• medical-imaging
• segmentation
• unet
• biomedical-imaging

Medical imaging processing for AI applications.

• pytorch
• medical-image-computing
• deep-learning
• data-augmentation

Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation

• convolutional-neural-networks
• attention-model
• image-classification
• image-segmentation

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

• medical-imaging
• medical-ai
• deep-learning
• machine-learning

3D medical imaging reconstruction software

• dicom
• dicom-viewer
• magnetic-resonance-imaging
• medical-image-processing

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

U-Net Brain Tumor Segmentation

• tensorflow
• tensorlayer
• unet
• medical-imaging

Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.

ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

• neuroimaging
• reproducibility
• pipeline
• meta-analysis

Axon/Myelin segmentation using Deep Learning

• deep-learning
• machine-learning
• myelin
• axon