Repository Index

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• segmentation

Segment Anything in Medical Images

This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

Multi-platform, free open source software for visualization and image computing.

• medical-imaging
• vtk
• itk
• python

Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.

• semi-supervised-learning

[IEEE TMI Best Paper Award] Official Implementation for UNet++

• medical-imaging
• segmentation
• unet
• biomedical-imaging

Medical imaging processing for AI applications.

• pytorch
• medical-image-computing
• deep-learning
• data-augmentation

Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

Arbitrary-precision arithmetic library for PHP

• php
• arbitrary-precision
• biginteger
• bigdecimal

Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation

• convolutional-neural-networks
• attention-model
• image-classification
• image-segmentation

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

• medical-imaging
• medical-ai
• deep-learning
• machine-learning

A lean C++ library for working with point cloud data

• point-cloud
• icp
• ransac
• convex-hull

:spider_web: Gmsh for Python

• python
• pypi
• mesh-generation
• engineering

3D medical imaging reconstruction software

• dicom
• dicom-viewer
• magnetic-resonance-imaging
• medical-image-processing

:triangular_ruler: Numerical integration (quadrature, cubature) in Python

• quadrature
• integration
• mathematics
• engineering

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)

• python
• mesh-generation
• scientific-computing
• triangle

A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.

• optimization
• optimization-algorithms
• optimization-methods
• optimization-problem

U-Net Brain Tumor Segmentation

• tensorflow
• tensorlayer
• unet
• medical-imaging

A Python native dynamical system simulation framework in the block diagram paradigm.

• blockdiagram
• control-systems
• hierarchical-modeling
• nonlinear-dynamics

Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.

A high-performance, high precision, zero allocation fixed-point decimal library for financial applications

• golang
• high-performance
• zero-allocation
• money

Probabilistic cell segmentation for in situ spatial transcriptomics