Repository Index

This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.

Unsupervised Learning for Image Registration

• image-registration
• image-alignment
• machine-learning
• deep-learning

This package contains deep learning models and related scripts for RoseTTAFold

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

This repository is for archival. Please see https://github.com/Mathics3/mathics-core

• computer-algebra

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

THIS MIRROR IS DEPRECATED -- New url: https://gitlab.com/libeigen/eigen

• cplusplus
• linear-algebra
• matrix
• sparse-matrix

Open source tools for computational pathology - Nature BME

• histopathology
• pathology
• weakly-supervised-learning
• whole-slide-imaging

Phishing Domains, urls websites and threats database. We use the PyFunceble testing tool to validate the status of all known Phishing domains and provide stats to reveal how many unique domains used for Phishing are still active.

• phishing
• phishing-sites
• phishing-reports
• phishing-servers

Gazebo database of SDF models. This is a predecessor to https://app.gazebosim.org

• gazebo
• simulation
• robot-simulation
• robotics

This rocq library aims to formalize a substantial body of mathematics using the univalent point of view.

• coq
• mathematics
• unimath
• coq-library

Pathology Foundation Model - Nature Medicine

• foundation
• foundation-model
• histopathology
• mahmoodlab

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

Clinical Histopathology Imaging Evaluation Foundation Model

Vision-Language Pathology Foundation Model - Nature Medicine

• bioimage-analysis
• bioimage-informatics
• conch
• foundation-model

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

• histopathology-images
• microscopy
• sliding-windows
• medical-image-analysis

Advanced date, time and interval library for Java with sun/moon-astronomy and calendars like Chinese, Coptic, Ethiopian, French Republican, Hebrew, Hijri, Historic Christian, Indian National, Japanese, Julian, Korean, Minguo, Persian, Thai, Vietnamese

• java
• time4j
• calendar
• interval

Tools for computational pathology

• machine-learning
• digital-pathology
• computational-pathology
• biomedical-image-processing

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

• histology
• wsi-images
• pan-cancer-analysis
• genomics

AI-based pathology predicts origins for cancers of unknown primary - Nature

• histology
• pathology
• wsi-images
• histopathology

Schema and data analyzer for MongoDB written in Go.

• mongodb
• schema
• analysis
• nosql

The open suite for process plants. Historian, analytics, alarms, dashboards, models and documents, built to work with AI.

Axon/Myelin segmentation using Deep Learning

• deep-learning
• machine-learning
• myelin
• axon

Data Access Client for Global Surface Summary of the Day (GSOD) Weather Written in R

• r
• weather-data
• gsod
• ncdc