Self-contained Japanese Morphological Analyzer written in pure Go
- japanese
- tokenizer
- nlp-library
- japanese-language
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Clinical Histopathology Imaging Evaluation Foundation Model
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
- histopathology-images
- microscopy
- sliding-windows
- medical-image-analysis
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
- ai
- cell
- digitalpathology
- microscopy
Fusing Histology and Genomics via Deep Learning - IEEE TMI
- pathomic
- fusion
- multimodal
- pathology
Collection of mathematical morphology methods and plugins for ImageJ
- image-processing
- image-analysis
- imagej
- fiji
An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!
- nlp-library
- uralic-languages
- finnish
- sami
The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.
- data-harmonization
- data-science
- depression
- harmonisation
Predicting Cell Health with Morphological Profiles
- carpenter-lab
- morphological-profiling
- crispr
- cell-painting
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
Attempt at reproducing a SGNN's projection layer, but with word n-grams instead of skip-grams. Paper and more: http://aclweb.org/anthology/D18-1105