Repository Index

TrackMate is your buddy for your everyday tracking.

• image-analysis
• single-particle-tracking
• fiji-plugin

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

• python
• microscopy
• scripting
• automation

Collection of mathematical morphology methods and plugins for ImageJ

• image-processing
• image-analysis
• imagej
• fiji

:art: Image processing toolbox for R

• r
• bioinformatics
• image-processing
• image-analysis

HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.

• image-processing
• images
• image-analysis
• deep-learning

Plugins for bone image analysis

• fiji-plugin
• image-analysis
• image-processing
• imagej-plugins

Lattice light-sheet post-processing utility.

• microscopy
• light-sheet
• image-processing
• image-analysis

Modular image and object analysis workflows for ImageJ/Fiji

• fiji-plugin
• modular
• imagej
• image-processing