SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
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Repository Index
47,133 repositories indexed
1–12 of 12 · Most stars
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
- python
- microscopy
- scripting
- automation
A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
Collection of mathematical morphology methods and plugins for ImageJ
- image-processing
- image-analysis
- imagej
- fiji
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
- biology
- fluorescence
- image-analysis
- image-processing
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
- r
- neuroanatomy-toolbox
- cran
- neuron
:art: Image processing toolbox for R
- r
- bioinformatics
- image-processing
- image-analysis
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
- image-processing
- images
- image-analysis
- deep-learning
Plugins for bone image analysis
- fiji-plugin
- image-analysis
- image-processing
- imagej-plugins
Lattice light-sheet post-processing utility.
- microscopy
- light-sheet
- image-processing
- image-analysis
Modular image and object analysis workflows for ImageJ/Fiji
- fiji-plugin
- modular
- imagej
- image-processing