Open scientific N-dimensional image processing :microscope: :sparkler:
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Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
- imagej
- scikit-image
- opencv
- simpleitk
A "batteries-included" distribution of ImageJ :battery:
Public domain software for processing and analyzing scientific images
Collection of mathematical morphology methods and plugins for ImageJ
- image-processing
- image-analysis
- imagej
- fiji
The framework for quantification of neuronal anatomy
- neuroscience
- neuroanatomy-toolbox
- imagej
- imagej2
ImageJ functions and macros for working with thermal image files
- heat-transfer
- temperature-reading
- thermal-imaging
- imagej-macro
Plugins for bone image analysis
- fiji-plugin
- image-analysis
- image-processing
- imagej-plugins
An interactive image processing program for biologists written in Python.
- biologists
- python
- imagej
- calcium
Plugins for ImageJ - color space conversions and color calibration
- ijp-color
- scala
- imagej
- sbt-imagej
Z-stack Depth Colorcode ImageJ FIJI plugin
- imagej-plugin
- colorcode
- fiji
- imagej
Imagej macro to calculate the MTF based on a knife edge measurement
- imagej-macro
- electron-microscopy
- image-analysis
- x-ray-imaging
Modular image and object analysis workflows for ImageJ/Fiji
- fiji-plugin
- modular
- imagej
- image-processing
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
- imagej
- fiji
- electron-microscopy
- scalebar
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
- segmentation
- image-processing
- zebrafish
- vasculature
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
- cell
- motility
- segmentation
- imagej
Analysis of cell migration in Igor Pro
- igor
- imagej
- cell-migration
- tracking
XitoSBML - the spatial SBML plugin for ImageJ
- sbml
- systems-biology
- spatial-sbml-plugin
- imagej