TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
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An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
- itk
- insight-toolkit
- jupyter
- jupyter-widget
cell detection in calcium imaging recordings
- imaging
- neuroscience
- data-analysis
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
- imaging
- ai
- cloud-computing
- medical-imaging
Deep and Machine Learning for Microscopy
- microscopy
- materials
- machine-learning
- materials-science
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
- cancer-imaging-research
- radiomics
- radiomics-features
- machine-learning
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
Single-cell fluorescence microscopy data analysis
- microscopy
- fluorescence-microscopy-imaging
Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats.
- nifti
- afni
- analyze