Open source code for AlphaFold 2.
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AlphaFold 3 inference pipeline.
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
- bioinformatics
- exact-optimization
- metabolomics
- paired-data
Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
BulkFormer: A large-scale foundation model for human bulk transcriptomes
Methods for Image-Based Cell Profiling
Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics
- bioinformatics
- cell-type-deconvolution
- computational-biology
- deconvolution