SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
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Official repository for the ProteinGym benchmarks
- benchmark
- computational-biology
- protein
- protein-design
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
- bioinformatics
- exact-optimization
- metabolomics
- paired-data
Schema and generated objects for biolink data model and upper ontology
- biolink
- monarchinitiative
- gene-ontology
- datamodel
OCaml Bioinformatics Library
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
Run scripts, explore your genome, and get personalized explanations — all in natural dialogue.
- analysis
- claude
- claudecode
- dna
Predicting Cell Health with Morphological Profiles
- carpenter-lab
- morphological-profiling
- crispr
- cell-painting