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Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.
Brian is a free, open source simulator for spiking neural networks.
A list of schools and researchers in computational neuroscience
A Python package to visualise neuroanatomical data in atlas space
cell detection in calcium imaging recordings
Automated 3D cell detection in very large images
PyTorch Connectomics: segmentation toolbox for EM connectomics
A Python interface to access neuroanatomical atlases
Automated 3D brain registration with support for multiple species and atlases.
Inner ear models for Python
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
The framework for quantification of neuronal anatomy
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance