Repository Index

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

• jax

PyWavelets - Wavelet Transforms in Python

• wavelets
• wavelet-transform
• signal-processing
• image-processing

a Fast Fourier Transform (FFT) library that tries to Keep it Simple, Stupid

Linear algebra, eigenvalues, FFT, Bessel, elliptic, orthogonal polys, geometry, NURBS, numerical quadrature, 3D transfinite interpolation, random numbers, Mersenne twister, probability distributions, optimisation, differential equations.

• scientific-computing
• linear-algebra
• differential-equations
• sparse-systems

Vulkan/CUDA/HIP/OpenCL/Level Zero/Metal Fast Fourier Transform library

• vulkan
• fft
• convolution
• r2c

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

• medical-imaging
• medical-ai
• deep-learning
• machine-learning

A coupling library and ecosystem for partitioned multi-physics and multi-scale simulations, including surface and volume coupling.

• multi-physics
• fluid-structure-interaction
• high-performance-computing
• conjugate-heat-transfer

Foundation Models for Genomics & Transcriptomics

• genomics
• deep-learning
• transformer
• dna

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

• kmer
• dnabert-model
• kmer-format
• gpu

A tool for semi-automatic cell type classification

• python
• single-cell
• machine-learning
• scrna-seq

C Implementation of 1D and 2D Wavelet Transforms (DWT,SWT and MODWT) along with 1D Wavelet packet Transform and 1D Continuous Wavelet Transform.

• wavelets
• dwt
• continuous-wavelet-transform
• wavelet-packet-trees

A thin layer of graphic data types

• graphics-library
• vector
• transformations
• matrix

The repository host gives no description.

The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.

• cwt
• matlab
• cpp
• optimization

One open-source modeler for structures, heat and fluids, built from scratch in pure Rust: parametric part in, verified results out. Automatic all-hex and tet meshing, our own nonlinear implicit and explicit FEA, heat transfer and lattice Boltzmann CFD — every result checked against theory. For engineers and AI agents alike. Free, forever.

• cae
• cfd
• computational-mechanics
• explicit-dynamics

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)

The official NFFT library repository

• nfft
• fftw
• fourier-transform
• c

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

• disentanglement
• drug-discovery
• genomics
• perturbation

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524

• self-attention
• compound-protein-interaction
• transformercpi
• structure-free-virtual-sreening

python functions for simulating optical transfer functions

• microscopy
• numpy

👩‍💻 Matrix and other math, accelerated by WebGPU and WASM

• webgpu
• deno
• matrix
• machine-learning

Research experiments exploring uncommon quant techniques.

• analysis
• jupyter-notebook
• python
• quant

Lua package that includes functions for Fast Fourier Transformations.