Repository Index

Official git repository for Biopython (originally converted from CVS)

• python
• bioinformatics
• genomics
• biopython

Desktop app for managing BibTeX and BibLaTeX (.bib) libraries

• jabref
• bibtex
• java
• latex

Official repository for the Boltz biomolecular interaction models

• binding-prediction
• drug-discovery
• protein-structure

The official sources for the RDKit library

• cheminformatics
• c-plus-plus
• python
• rdkit

This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.

[IEEE TMI Best Paper Award] Official Implementation for UNet++

• medical-imaging
• segmentation
• unet
• biomedical-imaging

WeeWX code repository

• weather
• python
• weewx
• raspberry-pi

Official Repository for the Uni-Mol Series Methods

• molecular-modeling
• pre-trained-model
• pretraining
• deep-learning

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

• workflow-execution
• workflow
• cloud
• hpc

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

• foundation-models
• genomics
• language-models

Official release of the ProGen models

• language-model
• protein
• generative-model

Official repository for the ProteinGym benchmarks

• benchmark
• computational-biology
• protein
• protein-design

The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)

• ai-for-science
• diffusion-models
• drug-design
• equivariant-networks

Mir (backports): Sparse tensors, Hoffman

• mir
• glas
• blas
• mir-glas

TranslatedAcademic research library for DSH — search, cite, approve imports, hand off notes. Also: a research literature library plugin for DeepSeek Harness: search papers, include sources, approve imports into the library, and hand off note leads to other plugins in the same session.

• academic
• agentero
• ai-agents
• citations

The official NFFT library repository

• nfft
• fftw
• fourier-transform
• c

OFF, Open source Finite volume Fluid dynamics code

• fluid-dynamics
• fortran
• oop
• cfd

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

python functions for simulating optical transfer functions

• microscopy
• numpy

A powerful library extending VBA with over 100 functions for math, stats, finance, and data manipulation. It supports matrix operations, and user-defined functions, enhancing automation and analysis within Microsoft Office and LibreOffice environments for data management, financial calculations, an more.

• equation-systems
• mathematical-expression-parser
• mathematical-expressions-evaluator
• determinant-calculation

Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding

• autoencoder
• imputation
• integration
• multimodal