Open source code for AlphaFold 2.
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AlphaFold 3 inference pipeline.
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
- drug-discovery
- quantum-chemistry
- deep-learning
- biology
Official repository for the Boltz biomolecular interaction models
- binding-prediction
- drug-discovery
- protein-structure
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
- pytorch
- protein-structure
- alphafold2
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
- openworm
- elegans
- biology
- simulation
Making Protein folding accessible to all!
- bioinformatics
- multiple-sequence-alignment
- protein-structure
- structure-prediction
R toolkit for single cell genomics
- human-cell-atlas
- single-cell-rna-seq
- single-cell-genomics
- cran
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
- fastq
- qc
- preprocessing
- filtering
NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing
- python
- ecg
- eda
- emg
This package contains deep learning models and related scripts for RoseTTAFold
Toward High-Accuracy Open-Source Biomolecular Structure Prediction.
- ai4science
- research
Chai-1, SOTA model for biomolecular structure prediction
Tools (written in C using htslib) for manipulating next-generation sequencing data
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
Implementation of Alphafold 3 from Google Deepmind in Pytorch
- artificial-intelligence
- deep-learning
- attention-mechanisms
- denoising-diffusion
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
- artificial-intelligence
- deep-learning
- protein-folding
- attention-mechanism
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
- bioinformatics
- cross-platform
- fasta
- golang
Biological foundation modeling from molecular to genome scale
Toolkit for processing sequences in FASTA/Q formats
- bioinformatics
- sequence-analysis
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
An open-source application for biological image analysis
C library for high-throughput sequencing data formats
- htslib
- bioinformatics
- sam
- bam
Foundation Models for Genomics & Transcriptomics