Textures.js is a JavaScript library for creating SVG patterns
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Open scientific N-dimensional image processing :microscope: :sparkler:
A Python package to visualise neuroanatomical data in atlas space
- neuroscience
- python
- anatomy
- visualization
cell detection in calcium imaging recordings
- imaging
- neuroscience
- data-analysis
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
- omero
- java
- python
- server
Read and write Neuroglancer datasets programmatically.
- neuroglancer
- volumetric-data
- python
- cloud
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
- python
- microscopy
- scripting
- automation
A collection of tools for painting super-resolution images
- microscopy
- super-resolution
- smlm
- dna-paint
Accurate and efficient spot detection for microscopy data
The python-microscopy environment - an open-source package for light microscopy
Gaussian processes and Bayesian optimization for images and hyperspectral data
- image-processing
- hyperspectral-images
- gaussian-processes
- bayesian-optimization
Pure Python library for reading NIS Elements ND2 images and metadata
- nd2
- pims
- nikon
- nis-elements
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
- stitching
- microscopy
- microscopy-images
- fluorescence-microscopy-imaging
Pretty picture shader toy
Lattice light-sheet post-processing utility.
- microscopy
- light-sheet
- image-processing
- image-analysis
Noise Correction Algorithm for sCMOS cameras
- cmos
- imaging
- noise
- readout
MPO Stereoscopic 3D Photo Encoder/Decoder Library and CLI Utility
- jpeg-mpo
- multi-picture
- decoder
- go
An interactive image processing program for biologists written in Python.
- biologists
- python
- imagej
- calcium
Z-stack Depth Colorcode ImageJ FIJI plugin
- imagej-plugin
- colorcode
- fiji
- imagej
Imagej macro to calculate the MTF based on a knife edge measurement
- imagej-macro
- electron-microscopy
- image-analysis
- x-ray-imaging
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).
- imaging
- microscopy
- contractility
- collagen
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
- segmentation
- image-processing
- zebrafish
- vasculature
Panoptic segmentation algorithms for 2D and 3D electron microscopy images
- deep-learning
- semantic-segmentation
- segmentation
- pytorch