Repository Index

This package contains deep learning models and related scripts for RoseTTAFold

Python package for graph neural networks in chemistry and biology

• deep-learning
• graph-neural-networks
• dgl
• cheminformatics

A Go package for engineering organisms.

• synthetic-biology
• synbio
• genetic-engineering
• molecular-biology

R package for detecting doublets in single-cell RNA sequencing data

A Python Package for Protein Dynamics Analysis

• python
• protein
• dynamics

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk

• bioinformatics
• exact-optimization
• metabolomics
• paired-data