Tools for computational pathology
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47,133 repositories indexed
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PyTorch Connectomics: segmentation toolbox for EM connectomics
Read and write Neuroglancer datasets programmatically.
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
Gaussian processes and Bayesian optimization for images and hyperspectral data
Lattice light-sheet post-processing utility.
An interactive image processing program for biologists written in Python.
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720