Repository Index

deep learning for image processing including classification and object-detection etc.

• pytorch
• tensorflow2
• classification
• object-detection

Semantic segmentation models with 500+ pretrained convolutional and transformer-based backbones.

• segmentation
• image-processing
• pspnet
• unet

Multi-platform, free open source software for visualization and image computing.

• medical-imaging
• vtk
• itk
• python

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

• simpleitk
• c-plus-plus
• swig
• registration

3D medical imaging reconstruction software

• dicom
• dicom-viewer
• magnetic-resonance-imaging
• medical-image-processing

PyTorch Connectomics: segmentation toolbox for EM connectomics

• computer-vision
• neuroscience
• connectomics
• pytorch

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

• biology
• fluorescence
• image-analysis
• image-processing

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

• microscopy
• image-processing
• segmentation
• biology

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

• segmentation
• image-processing
• zebrafish
• vasculature