Repository Index

SciPy library main repository

• python
• scipy
• algorithms
• closember

The public CGAL repository, see the README below

• cgal
• c-plus-plus
• geometry
• algorithms

Official git repository for Biopython (originally converted from CVS)

• python
• bioinformatics
• genomics
• biopython

Official repository for the Boltz biomolecular interaction models

• binding-prediction
• drug-discovery
• protein-structure

LAPACK development repository

• linear-algebra
• lapack
• blas
• lapacke

The development repository for the deal.II finite element library

• finite-elements
• c-plus-plus
• fem
• hpc

Primary repository for the Trilinos Project

• snl-science-libs
• sandia-national-laboratories
• hpsf
• scientific-computing

WeeWX code repository

• weather
• python
• weewx
• raspberry-pi

Official Repository for the Uni-Mol Series Methods

• molecular-modeling
• pre-trained-model
• pretraining
• deep-learning

Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.

OpenMDAO repository.

• nasa
• open-source
• framework
• openmdao

libMesh github repository

• fem
• finite-element-methods
• simulation
• parallel

Main yt repository

• data
• visualization
• analysis
• python

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

• histopathology-images
• microscopy
• sliding-windows
• medical-image-analysis

bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.

• huggingface
• bert
• chemical-modelling
• chemical-smiles-data

Official repository for the ProteinGym benchmarks

• benchmark
• computational-biology
• protein
• protein-design

Associated Repository for "Translation between Molecules and Natural Language"

The official NFFT library repository

• nfft
• fftw
• fourier-transform
• c

Repository for Nicheformer: a foundation model for single-cell and spatial omics

Coq Repository at Nijmegen [maintainers=@spitters,@VincentSe,@Lysxia]

• coq-library
• real-number
• coq
• coq-ci

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

• foundation-models
• gpt
• single-cell

Updated infix.cl of the CMU AI repository, originally written by Mark Kantrowitz

• infix-notation
• common-lisp
• mathematics