Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
Repository Index
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Genome modeling and design across all domains of life
Official repository for the Boltz biomolecular interaction models
- binding-prediction
- drug-discovery
- protein-structure
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
- tensorflow
- deep-neural-network
- genomics
- science
Code for running RFdiffusion
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
- openworm
- elegans
- biology
- simulation
Making Protein folding accessible to all!
- bioinformatics
- multiple-sequence-alignment
- protein-structure
- structure-prediction
R toolkit for single cell genomics
- human-cell-atlas
- single-cell-rna-seq
- single-cell-genomics
- cran
Single-cell analysis in Python. Scales to >100M cells.
- machine-learning
- data-science
- visualize-data
- transcriptomics
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
- fastq
- qc
- preprocessing
- filtering
NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing
- python
- ecg
- eda
- emg
MMseqs2: ultra fast and sensitive search and clustering suite
- bioinformatics
- sequence-clustering
- profile-search
- sequence-search
Official code repository for GATK versions 4 and up
Tools (written in C using htslib) for manipulating next-generation sequencing data
Data intensive science for everyone.
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
Implementation of Alphafold 3 from Google Deepmind in Pytorch
- artificial-intelligence
- deep-learning
- attention-mechanisms
- denoising-diffusion
The repository host gives no description.
- foundation-model
- gpt
- single-cell
Biological foundation modeling from molecular to genome scale
Toolkit for processing sequences in FASTA/Q formats
- bioinformatics
- sequence-analysis
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
An open-source application for biological image analysis
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments