Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
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Spatial Single Cell Analysis in Python
- single-cell-rna-seq
- single-cell-genomics
- spatial-transcriptomics
- spatial-analysis
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
- cancer-genomics
- cnv-detection
- single-cell
- phylogeny
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
Probabilistic cell segmentation for in situ spatial transcriptomics
Repository for Nicheformer: a foundation model for single-cell and spatial omics
The repository host gives no description.
Learning cell communication from spatial graphs of cells
- tensorflow
- gnn
- glm
- cvae