Repository Index

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

• nci-itcr
• nci-qin
• quantitative-imaging
• imaging-informatics

Powerful modern math library for PHP: Features descriptive statistics and regressions; Continuous and discrete probability distributions; Linear algebra with matrices and vectors, Numerical analysis; special mathematical functions; Algebra

• math
• mathematics
• linear-algebra
• statistics

A lean C++ library for working with point cloud data

• point-cloud
• icp
• ransac
• convex-hull

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

• spark
• big-data
• bioinformatics
• genomics

:four_leaf_clover: Evolutionary optimization library for Go (genetic algorithm, partical swarm optimization, differential evolution)

• go
• optimization
• parallel
• machine-learning

A header-only C++ library for large scale eigenvalue problems

• eigenvalues
• arpack
• linear-algebra
• spectra

A flexible framework for solving PDEs with modern spectral methods.

• spectral-methods
• fluid-dynamics
• pde-solver

⚗ A package useful for chemistry written in Python

• chemistry
• physical-chemistry
• chemical-kinetics
• chemical-formulas

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

• dataset
• dna
• dna-processing
• dna-training

Schema and generated objects for biolink data model and upper ontology

• biolink
• monarchinitiative
• gene-ontology
• datamodel

High performance computational platform in Python for the spectral Galerkin method

• spectral-methods
• galerkin
• fenics
• turbulence

Simple Features is a pure Go Implementation of the OpenGIS Simple Feature Access Specification

• postgis
• spatial-analysis
• gis
• go

Automated 3D brain registration with support for multiple species and atlases.

• registration
• atlases
• brain
• neuroscience

Plotly for C++. A C++ interface to the Plotly.js figure spec, for creating interactive data visualizations.

• charts
• cpp
• graphs
• plotly

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

• r
• neuroanatomy-toolbox
• cran
• neuron

Small size matrix handling module with a few linear algebra operations specifically for MicroPython (Python3)

Qurry (was) a prototype for a functional quantum programming language. It incorporated many aspects of functional programming (Haskell, Clojure), but also took standard design philosophies from C++, Python, and other "traditional" languages. [category: quantum]