Repository Index

RNA-seq aligner

QuTiP: Quantum Toolbox in Python

• qutip
• python
• quantum-toolbox
• quantum

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

• drug-repurposing
• deep-learning
• drug-target-interactions
• toolkit

PyKEP is a scientific library providing basic tools for research in interplanetary trajectory design.

• interplanetary
• mission-analysis
• astrodynamics
• aerospace

Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star

• dna
• language-model
• variant-effect-prediction
• genomics

The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)

• ai-for-science
• diffusion-models
• drug-design
• equivariant-networks

Produce a sharp image of a planetary system object (moon, sun, planets) from many seeing-affected frames according to the "lucky imaging" technique.

GraphDTA: Predicting drug-target binding affinity with graph neural networks

Source code for "DeepDTA: deep drug-target binding affinity prediction"

• protein-ligand-interactions
• convolutional-neural-networks

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)

A formalization of geometry in Coq based on Tarski's axiom system

• formalization
• coq
• geometry
• tarski-axiom

A Network Integration Approach for Drug-Target Interaction Prediction

CLI tool to profile Terraform runs, written in Go

• golang
• profiling
• statistics
• terraform

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524

• self-attention
• compound-protein-interaction
• transformercpi
• structure-free-virtual-sreening

Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)

• ddi
• drug-synergy
• synergy-prediction
• deep-chemistry

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

• computational-biology
• bioinformatics
• graph-convolution
• deep-learning

Astronomical FITS image analysis tool for detecting asteroids, comets, satellites, moving objects, and transients in astrophotography data.

• astronomy
• astronomy-software
• astrophotography
• moving-object-detection