Repository Index

Google's Operations Research tools:

• combinatorial-optimization
• linear-programming
• operations-research
• optimization

Suite of tools for deploying and training deep learning models using the JVM. Highlights include model import for keras, tensorflow, and onnx/pytorch, a modular and tiny c++ library for running math code and a java based math library on top of the core c++ library. Also includes samediff: a pytorch/tensorflow like library for running deep learn...

• java
• gpu
• deeplearning
• neural-nets

Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.

• traffic
• simulation
• transport

Deep probabilistic analysis of single-cell and spatial omics data

• scrna-seq
• variational-bayes
• variational-autoencoder
• cite-seq

A research toolkit for particle swarm optimization in Python

• particle-swarm-optimization
• optimization-tools
• pso
• global-optimization

C library for high-throughput sequencing data formats

• htslib
• bioinformatics
• sam
• bam

:1234: Bits, bytes and general-purpose calculator

• storage
• storage-unit-converter
• command-line
• standalone

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

• variant-calling
• genomics
• vcf-manipulation
• genotyping

open source software for bidimensional and tridimensional remeshing

• mesh
• mesh-adaptation
• anisotropic-mesh-adaptation
• isotropic-mesh-adaptation

Tools for computational pathology

• machine-learning
• digital-pathology
• computational-pathology
• biomedical-image-processing

A dependency-free cross-platform swiss army knife for PDB files.

• python
• protein
• pdb
• bioinformatics

Benchmarking analysis of data integration tools

PyKEP is a scientific library providing basic tools for research in interplanetary trajectory design.

• interplanetary
• mission-analysis
• astrodynamics
• aerospace

Universal cheminformatics toolkit, utilities and database search tools

• indigo
• bingo
• cheminformatics
• chemistry

Solve automatic numerical differentiation problems in one or more variables.

CGRs, molecules and reactions manipulation

ChemMine Tools: open source web framework for small molecule analysis

💬 Trace citation chains for any concept across research papers and render them as an interactive graph.

• academic-research
• bibliography
• citation-graph
• cli

Translatedfractional api base on golang . golang math tools fractional molecular denominator fraction calculation numerator denominator operations

• fractional
• molecular
• denominator
• operation

Coqtail is a library of mathematical theorems and tools proved inside the Coq proof assistant. Results range mostly from arithmetic to real and complex analysis. [maintainer=@jmadiot]

• coq
• complex-analysis
• real-analysis

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

• qa
• mri
• neuroimaging
• niqc

DetecDiv provides a comprehensive set of tools to analyze time microscopy images using deep learning methods. The software structure is such that data can be processed either at the command line or using a graphical user-interface. Detecdiv classification models include : image classification and regression, semantic segmentation, LSTM networks to analyze data and image timeseries.

Preview Go struct field-alignment savings as a diff, not a rewrite.

• cli
• go
• go-tools
• golang

A fast Fortran formatter, written in Rust

• cli-tools
• code-formatter
• formatter
• rust