Foundation Models for Genomics & Transcriptomics
Repository Index
47,133 repositories indexed
1–8 of 8 · Most stars
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
Fusing Histology and Genomics via Deep Learning - IEEE TMI
- pathomic
- fusion
- multimodal
- pathology
Autonomous multi-agent framework to optimize scientific software
- acceleration
- agentic-ai
- ai-agents
- bioinformatics
MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics
- bioinformatics
- cell-type-deconvolution
- computational-biology
- deconvolution
Generative models for transcriptomic-driven or protein-driven molecular design (PaccMann^RL).
- deep-reinforcement-learning
- generative-model
- vae
- molecule-generation
Bioinformatics-themed kata for practicing string manipulation in a data transformation pipeline. Contains replit files to work quickly in an online dojo setting.
- kata
- challenge
- python
- bioinformatics