Multi-platform, free open source software for visualization and image computing.
- medical-imaging
- vtk
- itk
- python
Repository Index
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Train AI models efficiently on medical images using any framework
- pytorch
- deep-learning
- keras
- neuroimaging
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
A Python interface to access neuroanatomical atlases
- neuroscience
- python
- microscopy
- registration
Automated 3D brain registration with support for multiple species and atlases.
- registration
- atlases
- brain
- neuroscience
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
Axon/Myelin segmentation using Deep Learning
- deep-learning
- machine-learning
- myelin
- axon
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
- qa
- mri
- neuroimaging
- niqc
legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm
- fmri-preprocessing
- fmri
a collection of small utlities useful for neuroimaging research
- utilities