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Tags: Science and math
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1–24 of 32 · Most stars

A lean C++ library for working with point cloud data

  • point-cloud
  • icp
  • ransac
  • convex-hull

The Point Processing Toolkit (pptk) is a Python package for visualizing and processing 2-d/3-d point clouds.

Spatial Single Cell Analysis in Python

  • single-cell-rna-seq
  • single-cell-genomics
  • spatial-transcriptomics
  • spatial-analysis

Universal cheminformatics toolkit, utilities and database search tools

Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  • hubmap
  • imaging
  • openmicroscopy
  • ome-tiff

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

  • r
  • neuroanatomy-toolbox
  • cran
  • neuron