201.KangBoming / BulkFormer
BulkFormer: A large-scale foundation model for human bulk transcriptomes
+30 stars
from 57 · score 3.43
Trending repositories
Ranked by Attention Score: stars gained over the last 180 complete days
201–300 of 303 by Attention Score · May 9, 2026 – Nov 4, 2026 (UTC)
202.microsoft / tensorwatch
Debugging, monitoring and visualization for Python Machine Learning and Data Science
- ai
- deep-learning
- deeplearning
- machine-learning
- machinelearning
- reinforcement-learning
- +12 more
+28 stars
from 3,451 · score 3.37
203.ypwhs / captcha_break
TranslatedCAPTCHA recognition
- captcha-breaking
- keras-tutorials
- deep-learning
- keras
- ocr
- captcha
- +4 more
+28 stars
from 2,794 · score 3.37
204.agemagician / ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
+28 stars
from 1,295 · score 3.37
205.biomap-research / scFoundation
The repository host gives no description.
+28 stars
from 404 · score 3.37
206.instillai / TensorFlow-Course
:satellite: Simple and ready-to-use tutorials for TensorFlow
- tensorflow
- python
- deep-learning
- deep-learning-tutorial
+27 stars
from 16,231 · score 3.33
207.gnn4dr / DRKG
A knowledge graph and a set of tools for drug repurposing
- drug-repurposing
- knowledge-graph
- graph-neural-networks
- knowledge-graph-embeddings
- dgl-ke
- dgl
+26 stars
from 678 · score 3.30
208.pkmital / tensorflow_tutorials
From the basics to slightly more interesting applications of Tensorflow
+24 stars
from 5,645 · score 3.22
209.elastic / emberArchived
Elastic Malware Benchmark for Empowering Researchers
+23 stars
from 1,147 · score 3.18
210.J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
- protein-fitness-prediction
- protein-function-prediction
+23 stars
from 121 · score 3.18
211.ml-tooling / ml-workspace
🛠 All-in-one web-based IDE specialized for machine learning and data science.
- machine-learning
- deep-learning
- data-science
- docker
- jupyter
- jupyter-lab
- +14 more
+22 stars
from 3,528 · score 3.14
212.kexinhuang12345 / clinicalBERT
ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
- clinicalbert
- hospital-readmission
- prediction
+22 stars
from 433 · score 3.14
213.HenriquesLab / ZeroCostDL4Mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
+21 stars
from 637 · score 3.09
214.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+21 stars
from 230 · score 3.09
215.CFA-Institute-RPC / The-Automation-Ahead
Code repository for The Automation Ahead series, showcasing practical examples for GenAI-driven automation in investments. Each installment dives into specific tools, techniques, and use cases to help professionals assess and apply GenAI effectively.
- data-science
- deep-learning
- finance
- financial-data
- jupyter-notebook
- natural-language-processing
- +1 more
+21 stars
from 53 · score 3.09
216.jbmouret / matplotlib_for_papers
Handout for the tutorial "Creating publication-quality figures with matplotlib"
+20 stars
from 2,186 · score 3.04
217.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+20 stars
from 172 · score 3.04
218.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+20 stars
from 159 · score 3.04
219.guillaume-chevalier / LSTM-Human-Activity-Recognition
Human Activity Recognition example using TensorFlow on smartphone sensors dataset and an LSTM RNN. Classifying the type of movement amongst six activity categories - Guillaume Chevalier
- machine-learning
- deep-learning
- lstm
- human-activity-recognition
- neural-network
- rnn
- +3 more
+19 stars
from 3,471 · score 3.00
220.cantinilab / scPRINT
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
- embeddings
- gene-regulatory-network
- +12 more
+19 stars
from 145 · score 3.00
221.juanklopper / MIT_OCW_Linear_Algebra_18_06
IPython notebooks on Gilbert Strang's MIT course on linear algebra (18.06)
+18 stars
from 572 · score 2.94
222.tensorflow / lucidArchived
A collection of infrastructure and tools for research in neural network interpretability.
- tensorflow
- interpretability
- visualization
- machine-learning
- colab
- jupyter-notebook
+17 stars
from 4,689 · score 2.89
223.mpld3 / mpld3
An interactive data visualization tool which brings matplotlib graphics to the browser using D3.
+17 stars
from 2,395 · score 2.89
224.rsvp / fecon235
Notebooks for financial economics. Keywords: Jupyter notebook pandas Federal Reserve FRED Ferbus GDP CPI PCE inflation unemployment wage income debt Case-Shiller housing asset portfolio equities SPX bonds TIPS rates currency FX euro EUR USD JPY yen XAU gold Brent WTI oil Holt-Winters time-series forecasting statistics econometrics
- jupyter-notebook
- pandas
- federal-reserve
- gdp
- inflation
- housing
- +14 more
+17 stars
from 1,265 · score 2.89
225.AnacletoLAB / grape
🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations
- graph
- high-performance
- machine-learning
- knowledge-graph
+16 stars
from 626 · score 2.83
226.CambridgeUniversityPress / FirstCourseNetworkScience
Tutorials, datasets, and other material associated with textbook "A First Course in Network Science" by Menczer, Fortunato & Davis
- social-network
- indiana-university
- network-science
- textbook
- datasets
- python
- +2 more
+16 stars
from 425 · score 2.83
227.nasaharvest / cropharvest
Open source remote sensing dataset with benchmarks
+15 stars
from 231 · score 2.77
228.theislab / chemCPA
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
- single-cell
- transfer-learning
+15 stars
from 147 · score 2.77
229.mxrch / penglab
🐧 Abuse of Google Colab for cracking hashes.
+14 stars
from 964 · score 2.71
230.Perturbation-Response-Prediction / PRnet
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
+14 stars
from 78 · score 2.71
231.jacopotagliabue / MLSys-NYU-2022
Slides, scripts and materials for the Machine Learning in Finance Course at NYU Tandon, 2022
- coursework
- fraud-detection
- introduction-to-machine-learning
- machine-learning
- mlops
- recommender-system
+13 stars
from 546 · score 2.64
232.fastlib / fCWT
The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.
- cwt
- matlab
- cpp
- optimization
- c
- fast
- +3 more
+13 stars
from 391 · score 2.64
233.yiqunchen / GenePT
The repository host gives no description.
+13 stars
from 313 · score 2.64
+12 stars
from 1,687 · score 2.56
235.PaddlePaddle / Quantum
The repository host gives no description.
+12 stars
from 639 · score 2.56
236.theislab / scarches
Reference mapping for single-cell genomics
- single-cell
- deep-learning
- rna-seq-analysis
- data-integration
- batch-correction
- multimodal-deep-learning
- +4 more
+12 stars
from 402 · score 2.56
237.hectornieto / pyTSEB
A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data
- source-energy-balance
- canopy
- soil
- radiometric-temperatures
- heat
- satellite-imagery
- +1 more
+12 stars
from 160 · score 2.56
238.catboost / tutorials
CatBoost tutorials repository
- catboost
- tutorials
- ipython-notebook
- ipython
- kaggle
- titanic-dataset
+11 stars
from 1,100 · score 2.48
+11 stars
from 817 · score 2.48
240.seyonechithrananda / bert-loves-chemistry
bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.
- huggingface
- bert
- chemical-modelling
- chemical-smiles-data
+11 stars
from 491 · score 2.48
241.jamesmawm / mastering-python-for-finance-second-edition
Sources codes for: Mastering Python for Finance, Second Edition
- machine-learning
- python
- ai
+11 stars
from 461 · score 2.48
242.snap-stanford / SATURN
The repository host gives no description.
+11 stars
from 165 · score 2.48
243.sustainable-processes / summit
Optimising chemical reactions using machine learning
- chemistry
- machine-learning
- optimization
- bayesian-optimization
- neural-networks
- drug-discovery
- +4 more
+11 stars
from 144 · score 2.48
244.bowang-lab / scGPT-spatial
The repository host gives no description.
+10 stars
from 134 · score 2.40
245.tinghuiz / SfMLearner
An unsupervised learning framework for depth and ego-motion estimation from monocular videos
- deep-learning
- depth-prediction
- visual-odometry
- self-supervised-learning
- unsupervised-learning
+9 stars
from 2,007 · score 2.30
246.bmabey / pyLDAvis
Python library for interactive topic model visualization. Port of the R LDAvis package.
+9 stars
from 1,841 · score 2.30
247.vizzuhq / ipyvizzu
Build animated charts in Jupyter Notebook and similar environments with a simple Python syntax.
- jupyter
- jupyter-notebook
- python
- plotting
- graphs
- data-visualization
- +9 more
+9 stars
from 960 · score 2.30
248.akabe / ocaml-jupyter
An OCaml kernel for Jupyter (IPython) notebook
- ocaml
- functional-programming
- jupyter-kernels
- machine-learning
- datascience
- dataanalysis
- +4 more
+9 stars
from 310 · score 2.30
249.mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
- mahmoodlab
+9 stars
from 243 · score 2.30
250.OmicsML / CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
+9 stars
from 100 · score 2.30
251.marcotcr / anchor
Code for "High-Precision Model-Agnostic Explanations" paper
+8 stars
from 811 · score 2.20
252.pdpipe / pdpipe
Easy pipelines for pandas DataFrames.
- pandas
- pandas-dataframe
- pipeline
- data
- data-science
- dataframe
- +1 more
+8 stars
from 723 · score 2.20
253.Rachnog / Advanced-Deep-Trading
Mostly experiments based on "Advances in financial machine learning" book
+8 stars
from 563 · score 2.20
254.BaseModelAI / cleora
Cleora AI is a general-purpose open-source model for efficient, scalable learning of stable and inductive entity embeddings for heterogeneous relational data. Created by Synerise.com team.
- ai
- graphs
- synerise
- embeddings
- ml
- machine-learning
- +7 more
+8 stars
from 538 · score 2.20
+8 stars
from 116 · score 2.20
256.SuLab / DrugMechDB
A database of paths that represent the mechanism of action from a drug to a disease in an indication.
- ncats-translator
+8 stars
from 72 · score 2.20
257.isayev / ReLeaSE
Deep Reinforcement Learning for de-novo Drug Design
- deeplearning
- reinforcement-learning
- cheminformatics
- molecular-modeling
- drug-discovery
- qsar
+7 stars
from 368 · score 2.08
258.City-Form-Lab / madinaArchived
A Python library modeling pedestrian and bicycle trips over networks.
+6 stars
from 208 · score 1.95
259.groda / big_data
Big Data essentials: Hadoop, MapReduce, Spark. Explore tutorials and demos in Jupyter notebooks—most are self-contained and live, ready to run with a click.
+6 stars
from 83 · score 1.95
260.quantium-ai / research
Research experiments exploring uncommon quant techniques.
- analysis
- jupyter-notebook
- python
- quant
- quantitative-research
- research
- +7 more
+6 stars
from 63 · score 1.95
261.BinRoot / TensorFlow-Book
Accompanying source code for Machine Learning with TensorFlow. Refer to the book for step-by-step explanations.
- tensorflow
- machine-learning
- regression
- convolutional-neural-networks
- logistic-regression
- book
- +5 more
+5 stars
from 4,424 · score 1.79
262.awslabs / ec2-spot-labs
Collection of tools and code examples to demonstrate best practices in using Amazon EC2 Spot Instances.
+5 stars
from 977 · score 1.79
+5 stars
from 781 · score 1.79
264.hackthemarket / gym-trading
Environment for reinforcement-learning algorithmic trading models
+5 stars
from 708 · score 1.79
265.Albert-Z-Guo / Deep-Reinforcement-Stock-Trading
A light-weight deep reinforcement learning framework for portfolio management. This project explores the possibility of applying deep reinforcement learning algorithms to stock trading in a highly modular and scalable framework.
+5 stars
from 683 · score 1.79
266.google-research / robustness_metrics
The repository host gives no description.
+5 stars
from 470 · score 1.79
+5 stars
from 142 · score 1.79
268.ma-shamshiri / Human-Activity-Recognition
This project aims to classify human activities using data obtained from accelerometer and gyroscope sensors from phone and watch.
+5 stars
from 126 · score 1.79
269.wukevin / babel
Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
- single-cell
- scrna-seq
- scatac-seq
- deep-neural-networks
- multi-omics
+5 stars
from 48 · score 1.79
270.myzhengSIMM / TranSiGen
The repository host gives no description.
+5 stars
from 34 · score 1.79
271.lefnire / tforce_btc_trader
TensorForce Bitcoin Trading Bot
+4 stars
from 829 · score 1.61
272.Murgio / Food-Recipe-CNN
food image to recipe with deep convolutional neural networks.
- convolutional-neural-networks
- keras
- chef
- deep-learning
- data-science
- python3
- +14 more
+4 stars
from 584 · score 1.61
273.chengstone / LotteryPredict
TranslatedTensorFlow in practice: using LSTM to predict lottery results
+4 stars
from 411 · score 1.61
274.ghgr / HFT_Bitcoin
Analysis of High Frequency Trading on Bitcoin exchanges
+4 stars
from 170 · score 1.61
275.araichev / gtfs_kitArchived
Moved to https://codeberg.org/araichev/gtfs_kit.
+4 stars
from 119 · score 1.61
276.h2oai / h2o-tutorialsArchived
Tutorials and training material for the H2O Machine Learning Platform
- h2o
- tutorial
- machine-learning
- data-science
- deep-learning
- python
- +1 more
+3 stars
from 1,494 · score 1.39
277.patil-suraj / question_generation
Neural question generation using transformers
- nlp
- nlg
- deep-learning
- transformer
- t5
- question-generation
- +2 more
+3 stars
from 1,135 · score 1.39
278.6-Billionaires / trading-gym
This trading-gym is the first trading for agent to train with episode of short term trading itself.
+3 stars
from 232 · score 1.39
279.zephyr-data-specs / GMNS
General Modeling Network Specification
- network
- specification
- highway-network
- road-network
- transportation-planning
+3 stars
from 132 · score 1.39
280.commoncrawl / cc-notebooks
Various Jupyter notebooks about Common Crawl data
- jupyter-notebook
- common-crawl
- aws-athena
- webarchiving
- commoncrawl
- webgraph-framework
+3 stars
from 66 · score 1.39
281.mahmoodlab / MAPS
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
+3 stars
from 64 · score 1.39
+3 stars
from 57 · score 1.39
283.guillaume-chevalier / seq2seq-signal-prediction
Signal forecasting with a Sequence-to-Sequence (seq2seq) Recurrent Neural Network (RNN) model in TensorFlow - Guillaume Chevalier
- seq2seq
- tensorflow
- tensorflow-tutorials
- python
+2 stars
from 1,081 · score 1.10
+2 stars
from 858 · score 1.10
285.rsteca / sklearn-deap
Use evolutionary algorithms instead of gridsearch in scikit-learn
+2 stars
from 770 · score 1.10
286.statisticianinstilettos / recmetrics
A library of metrics for evaluating recommender systems
+2 stars
from 579 · score 1.10
287.filangelos / qtraderArchived
Reinforcement Learning for Portfolio Management
- reinforcement-learning
- recurrent-neural-networks
- q-learning
- algorithmic-trading
- python
+2 stars
from 478 · score 1.10
288.xiaowuc2 / ChatGPT-Python-Applications
ChatGPT Python Applications integrated with third party libraries and modules
+2 stars
from 185 · score 1.10
+2 stars
from 182 · score 1.10
+2 stars
from 159 · score 1.10
291.emptymalei / statisticalphysics
open source E-book on statistical physics
- statistical-physics
- statistical-mechanics
+2 stars
from 50 · score 1.10
292.Ceruleanacg / Quantitative-Trading
💸 Papers and Code Implements for Quantitative-Trading
+2 stars
from 39 · score 1.10
293.BoevaLab / CancerFoundation
CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer
- cancer
- foundation-model
- single-cell
+2 stars
from 30 · score 1.10
294.LigandPro / Bento
UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.
- benchmark
- bioinformatics
- cheminformatics
- computational-chemistry
- drug-discovery
- hpc
- +6 more
+2 stars
from 11 · score 1.10
295.denizyuret / Knet.jl
Koç University deep learning framework.
+1 stars
from 1,430 · score 0.69
296.dennybritz / rnn-tutorial-rnnlm
Recurrent Neural Network Tutorial, Part 2 - Implementing a RNN in Python and Theano
+1 stars
from 898 · score 0.69
+1 stars
from 856 · score 0.69
298.AmazaspShumik / sklearn-bayes
Python package for Bayesian Machine Learning with scikit-learn API
- python
- bayesian-machine-learning
- machine-learning
- scikit-learn
- bayesian
+1 stars
from 520 · score 0.69
299.pprzetacznik / IElixir
Jupyter's kernel for Elixir programming language
- elixir
- jupyter
- jupyter-kernels
- repl
- jupyter-notebook
+1 stars
from 368 · score 0.69
300.jvkersch / hsmmlearnArchived
A library for hidden semi-Markov models with explicit durations
+1 stars
from 88 · score 0.69