1.Biohub / esm
The repository host gives no description.
+711 stars
from 2,304 · score 6.57
Trending repositories
Ranked by Attention Score: stars gained over the last 180 complete days
24 repositories by Attention Score · May 9, 2026 – Nov 4, 2026 (UTC)
+193 stars
from 1,706 · score 5.27
+122 stars
from 1,540 · score 4.81
4.mims-harvard / PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
- dataset
- graph-machine-learning
- +2 more
+95 stars
from 743 · score 4.56
5.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+78 stars
from 859 · score 4.37
6.kexinhuang12345 / DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
- covid19
- virtual-screening
- +13 more
+49 stars
from 1,152 · score 3.91
7.songlab-cal / gpn
Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star
- dna
- language-model
- variant-effect-prediction
- genomics
+49 stars
from 338 · score 3.91
8.KangBoming / BulkFormer
BulkFormer: A large-scale foundation model for human bulk transcriptomes
+30 stars
from 57 · score 3.43
9.agemagician / ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
+28 stars
from 1,295 · score 3.37
10.biomap-research / scFoundation
The repository host gives no description.
+28 stars
from 404 · score 3.37
11.J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
- protein-fitness-prediction
- protein-function-prediction
+23 stars
from 121 · score 3.18
12.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+21 stars
from 230 · score 3.09
13.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+20 stars
from 172 · score 3.04
14.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+20 stars
from 159 · score 3.04
15.cantinilab / scPRINT
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
- embeddings
- gene-regulatory-network
- +12 more
+19 stars
from 145 · score 3.00
16.theislab / chemCPA
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
- single-cell
- transfer-learning
+15 stars
from 147 · score 2.77
17.Perturbation-Response-Prediction / PRnet
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
+14 stars
from 78 · score 2.71
18.yiqunchen / GenePT
The repository host gives no description.
+13 stars
from 313 · score 2.64
19.theislab / scarches
Reference mapping for single-cell genomics
- single-cell
- deep-learning
- rna-seq-analysis
- data-integration
- batch-correction
- multimodal-deep-learning
- +4 more
+12 stars
from 402 · score 2.56
20.snap-stanford / SATURN
The repository host gives no description.
+11 stars
from 165 · score 2.48
21.bowang-lab / scGPT-spatial
The repository host gives no description.
+10 stars
from 134 · score 2.40
22.mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
- mahmoodlab
+9 stars
from 243 · score 2.30
23.OmicsML / CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
+9 stars
from 100 · score 2.30
+8 stars
from 116 · score 2.20