+36 stars
from 1,863 · score 3.61
Trending repositories
Ranked by Attention Score: stars gained over the last 30 complete days
22 repositories by Attention Score · Oct 6, 2026 – Nov 4, 2026 (UTC)
2.Biohub / esm
The repository host gives no description.
+35 stars
from 2,980 · score 3.58
+18 stars
from 1,644 · score 2.94
4.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+15 stars
from 922 · score 2.77
5.kexinhuang12345 / DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
- covid19
- virtual-screening
- +13 more
+9 stars
from 1,192 · score 2.30
6.mims-harvard / PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
- dataset
- graph-machine-learning
- +2 more
+9 stars
from 829 · score 2.30
7.songlab-cal / gpn
Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star
- dna
- language-model
- variant-effect-prediction
- genomics
+4 stars
from 383 · score 1.61
8.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+4 stars
from 247 · score 1.61
9.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+4 stars
from 175 · score 1.61
10.biomap-research / scFoundation
The repository host gives no description.
+3 stars
from 429 · score 1.39
11.theislab / scarches
Reference mapping for single-cell genomics
- single-cell
- deep-learning
- rna-seq-analysis
- data-integration
- batch-correction
- multimodal-deep-learning
- +4 more
+3 stars
from 411 · score 1.39
12.J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
- protein-fitness-prediction
- protein-function-prediction
+3 stars
from 141 · score 1.39
13.yiqunchen / GenePT
The repository host gives no description.
+2 stars
from 324 · score 1.10
14.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+2 stars
from 190 · score 1.10
15.cantinilab / scPRINT
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
- embeddings
- gene-regulatory-network
- +12 more
+2 stars
from 162 · score 1.10
16.theislab / chemCPA
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
- single-cell
- transfer-learning
+2 stars
from 160 · score 1.10
17.bowang-lab / scGPT-spatial
The repository host gives no description.
+2 stars
from 142 · score 1.10
18.angelolab / ark-analysis
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
+2 stars
from 108 · score 1.10
19.OmicsML / CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
+2 stars
from 107 · score 1.10
20.snap-stanford / SATURN
The repository host gives no description.
+1 stars
from 175 · score 0.69
21.Durenlab / LINGER
The repository host gives no description.
+1 stars
from 141 · score 0.69
22.Perturbation-Response-Prediction / PRnet
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
+1 stars
from 91 · score 0.69