1.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+9 stars
from 928 · score 2.30
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9 repositories by Attention Score · Oct 29, 2026 – Nov 4, 2026 (UTC)
2.Biohub / esm
The repository host gives no description.
+8 stars
from 3,007 · score 2.20
+5 stars
from 1,894 · score 1.79
4.kexinhuang12345 / DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
- covid19
- virtual-screening
- +13 more
+2 stars
from 1,199 · score 1.10
5.mims-harvard / PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
- dataset
- graph-machine-learning
- +2 more
+2 stars
from 836 · score 1.10
6.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+1 stars
from 250 · score 0.69
7.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+1 stars
from 178 · score 0.69
8.J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
- protein-fitness-prediction
- protein-function-prediction
+1 stars
from 143 · score 0.69
9.OmicsML / CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
+1 stars
from 108 · score 0.69